Viewing Your Own Data with IGV
- Copy number analysis examines how chromosomal and sub-chromosomal sections of a genome vary relative to a control genome.
- The final data is in the form of .seg files. These describe chromosomal regions and enumerate if those regions are deleted (- numbers), the same or amplified (+ numbers) relative to the same region in controls.
- Save this FILE of zebrafish segments to your desktop. The assembly is Zv9.
- Use the "File-->Load From File" option to load the data into IGV.